PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 345aa    MW: 36656.2 Da    PI: 8.4939
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006219genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.38.1e-3684189394
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 
                + k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt                                     
  Cla006219  84 PTKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipttsparpngeiseaprkrrr 183
                789************************************************************5555555555555544422222222222222222221 PP

        TCP  66 ..ssssaseceaesssssasnsssgkaaksa 94 
                  s                         +s+
  Cla006219 184 kgS-------------------------NSE 189
                111.........................111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-2889172IPR005333Transcription factor, TCP
PROSITE profilePS5136926.54589143IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEETNQNHRH NEKEGSSNGG YENKTNSIVD SSNLAKAEEI LSDPHVEPPS TAVPKKEKEG  60
IMEHGLDIMH PLSLSQVPST VAKPTKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL  120
DHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVGGTL KIPTTSPARP NGEISEAPRK  180
RRRKGSNSES NDCNDQASVS SGLTPIAPMA AYGAGLVPFW GSAGGVTEPF FMVPGTSNNH  240
QPQLWAVPAR PISNLVSSMN PGLQFGGVVP VLARAVSNGS SGLESGSSPA IVSQSLMPAT  300
ASAPATTSGS TQMLRDFSLE IYEKKELEFM GRPSPAKSQT PCSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439154.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT896e-64TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0A0L8J70.0A0A0A0L8J7_CUCSA; Uncharacterized protein
STRINGGLYMA20G29330.21e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-60TCP family protein